Start New Search

Search results are listed below.
Tip:
To quickly search the same gene in another data set, click the links from the last column. The locuslink number will be used as query.

 

No probe set Gene Name Accession LocusLink Symbol Alias Symbols Description CTRL FSK (FSK vs CTRL) FC (FSK vs CTRL) LFC Note Link
1 201736_s_at similar to S. cerevisiae SSM4 BF00040910299TEB4 KIAA0597 gb:BF000409 /DB_XREF=gi:10700684 /DB_XREF=7h27h07.x1 /CLONE=IMAGE:3317245 /FEA=FLmRNA /CNT=237 /TID=Hs.20141.0 /TIER=Stack /STK=47 /UG=Hs.20141 /LL=10299 /UG_GENE=TEB4 /UG_TITLE=similar to S. cerevisiae SSM4 /FL=gb:AF009301.1 gb:NM_005885.1 918.44 992.47 1.08 1.01 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
2 215512_at similar to S. cerevisiae SSM4 AK00097010299TEB4 KIAA0597 "Consensus includes gb:AK000970.1 /DEF=Homo sapiens cDNA FLJ10108 fis, clone HEMBA1002609, highly similar to Homo sapiens mRNA for KIAA0597 protein. /FEA=mRNA /DB_XREF=gi:7021963 /UG=Hs.20141 similar to S. cerevisiae SSM4" 57.37 54.99 -1.04 -0.67 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
3 201737_s_at similar to S. cerevisiae SSM4 NM_00588510299TEB4 KIAA0597 "gb:NM_005885.1 /DEF=Homo sapiens similar to S. cerevisiae SSM4 (TEB4), mRNA. /FEA=mRNA /GEN=TEB4 /PROD=similar to S. cerevisiae SSM4 /DB_XREF=gi:5032166 /UG=Hs.20141 similar to S. cerevisiae SSM4 /FL=gb:AF009301.1 gb:NM_005885.1" 993.65 928.09 -1.07 -0.97 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction

Sample Description:
Primary culture of human pancreatic islet was treated with cAMP agonist forskolin (FSK) and compared with control untreated samples. RNA was extracted using the Qiagen RNeasy kit. Two control and two forskolin treated samples were analyzed.

Microarray Analysis:
Total RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133A 2.0 Array. Array data was analyzed using the dChip software with PM-MM models.

Guidelines for Choosing camp Induced Genes in this Data Set:
The fold change (FC) value is positive for increased expression and negative for decrease expression. There is also a lower bound of fold change (LFC), which is a conservative estimation of the fold change with 90% confidence. For this data set, if a gene was induced by FSK with LFC>=1.3, we consider it as a good camp induced gene and therefore a potential CREB target.