Start New Search

Search results are listed below.
Tip:
To quickly search the same gene in another data set, click the links from the last column. The locuslink number will be used as query.

 

No probe set Gene Name Accession LocusLink Symbol Alias Symbols Description CTRL FSK (FSK vs CTRL) FC (FSK vs CTRL) LFC Note Link
1 201619_at peroxiredoxin 3 NM_00679310935PRDX3 AOP-1;AOP1;MER5;MGC24293;PRO1748;SP-22 "gb:NM_006793.1 /DEF=Homo sapiens peroxiredoxin 3 (PRDX3), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=PRDX3 /PROD=peroxiredoxin 3 /DB_XREF=gi:5802973 /UG=Hs.75454 peroxiredoxin 3 /FL=gb:BC002685.1 gb:NM_006793.1 gb:D49396.1" 2037.9 2090.31 1.03 0.93 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
2 209766_at peroxiredoxin 3 AF11807310935PRDX3 AOP-1;AOP1;MER5;MGC24293;PRO1748;SP-22 "gb:AF118073.1 /DB_XREF=gi:6650791 /FEA=FLmRNA /CNT=71 /TID=Hs.278923.0 /TIER=FL /STK=0 /UG=Hs.278923 /LL=29017 /UG_GENE=PRO1748 /DEF=Homo sapiens PRO1748 mRNA, complete cds. /PROD=PRO1748 /FL=gb:AF118073.1" 330.39 306.18 -1.08 -0.88 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
3 215022_x_at gb:BG429214 /DB_XREF=gi:13335720 /DB_XREF=602498083F1 /CLONE=IMAGE:4611836 /FEA=mRNA /CNT=10 /TID=Hs.258144.0 /TIER=ConsEnd /STK=0 /UG=Hs.258144 /LL=7582 /UG_GENE=ZNF33B /UG_TITLE=zinc finger protein 33b (KOX 31) BG42921410935PRDX3 AOP-1;AOP1;MER5;MGC24293;PRO1748;SP-22 gb:BG429214 /DB_XREF=gi:13335720 /DB_XREF=602498083F1 /CLONE=IMAGE:4611836 /FEA=mRNA /CNT=10 /TID=Hs.258144.0 /TIER=ConsEnd /STK=0 /UG=Hs.258144 /LL=7582 /UG_GENE=ZNF33B /UG_TITLE=zinc finger protein 33b (KOX 31) 362.16 273.62 -1.32 -1.12 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction

Sample Description:
Primary culture of human pancreatic islet was treated with cAMP agonist forskolin (FSK) and compared with control untreated samples. RNA was extracted using the Qiagen RNeasy kit. Two control and two forskolin treated samples were analyzed.

Microarray Analysis:
Total RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133A 2.0 Array. Array data was analyzed using the dChip software with PM-MM models.

Guidelines for Choosing camp Induced Genes in this Data Set:
The fold change (FC) value is positive for increased expression and negative for decrease expression. There is also a lower bound of fold change (LFC), which is a conservative estimation of the fold change with 90% confidence. For this data set, if a gene was induced by FSK with LFC>=1.3, we consider it as a good camp induced gene and therefore a potential CREB target.