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To quickly search the same gene in another data set, click the links from the last column. The locuslink number will be used as query.

 

No probe set Gene Name Accession LocusLink Symbol Alias Symbols Description CTRL FSK (FSK vs CTRL) FC (FSK vs CTRL) LFC Note Link
1 209791_at "peptidyl arginine deiminase, type II" AL04956911240PADI2 KIAA0994;PDI2 "gb:AL049569 /DB_XREF=gi:5263031 /FEA=FLmRNA /CNT=48 /TID=Hs.33455.0 /TIER=Stack /STK=8 /UG=Hs.33455 /LL=11240 /UG_GENE=PDI2 /UG_TITLE=peptidyl arginine deiminase, type II /DEF=Human DNA sequence from clone RP1-37C10 on chromosome 1p35.2-35.21. Contains the gene for the ortholog of mouse and rat PDI (protein-arginine deiminase (KIAA0994, EC 3.5.3.15, peptidylarginine deiminase)), the SDHB gene for succinate dehydrogenase... /FL=gb:AB030176.1" 402.36 400.05 -1.01 -0.87 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction

Sample Description:
Primary culture of human pancreatic islet was treated with cAMP agonist forskolin (FSK) and compared with control untreated samples. RNA was extracted using the Qiagen RNeasy kit. Two control and two forskolin treated samples were analyzed.

Microarray Analysis:
Total RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133A 2.0 Array. Array data was analyzed using the dChip software with PM-MM models.

Guidelines for Choosing camp Induced Genes in this Data Set:
The fold change (FC) value is positive for increased expression and negative for decrease expression. There is also a lower bound of fold change (LFC), which is a conservative estimation of the fold change with 90% confidence. For this data set, if a gene was induced by FSK with LFC>=1.3, we consider it as a good camp induced gene and therefore a potential CREB target.