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No probe set Gene Name Accession LocusLink Symbol Alias Symbols Description CTRL FSK (FSK vs CTRL) FC (FSK vs CTRL) LFC Note Link
1 212008_at UBX domain containing 2 N2988923190UBXD2 KIAA0242;UBXDC1 gb:N29889 /DB_XREF=gi:1148409 /DB_XREF=yy11e11.s1 /CLONE=IMAGE:270956 /FEA=mRNA /CNT=337 /TID=Hs.77495.0 /TIER=Stack /STK=8 /UG=Hs.77495 /LL=23190 /UG_GENE=UBXDC1 /UG_TITLE=UBX domain-containing 1 782.28 714.84 -1.09 -1.02 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
2 212007_at Consensus includes gb:AI927512 /FEA=EST /DB_XREF=gi:5663476 /DB_XREF=est:wo90g11.x1 /CLONE=IMAGE:2462660 /UG=Hs.77495 UBX domain-containing 1 AI92751223190UBXD2 KIAA0242;UBXDC1 Consensus includes gb:AI927512 /FEA=EST /DB_XREF=gi:5663476 /DB_XREF=est:wo90g11.x1 /CLONE=IMAGE:2462660 /UG=Hs.77495 UBX domain-containing 1 1031.23 869 -1.19 -1.02 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
3 212006_at UBX domain containing 2 AU14990823190UBXD2 KIAA0242;UBXDC1 gb:AU149908 /DB_XREF=gi:11011429 /DB_XREF=AU149908 /CLONE=NT2RP2000896 /FEA=mRNA /CNT=337 /TID=Hs.77495.0 /TIER=Stack /STK=15 /UG=Hs.77495 /LL=23190 /UG_GENE=UBXDC1 /UG_TITLE=UBX domain-containing 1 1416.17 1296.16 -1.09 -1.04 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction

Sample Description:
Primary culture of human pancreatic islet was treated with cAMP agonist forskolin (FSK) and compared with control untreated samples. RNA was extracted using the Qiagen RNeasy kit. Two control and two forskolin treated samples were analyzed.

Microarray Analysis:
Total RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133A 2.0 Array. Array data was analyzed using the dChip software with PM-MM models.

Guidelines for Choosing camp Induced Genes in this Data Set:
The fold change (FC) value is positive for increased expression and negative for decrease expression. There is also a lower bound of fold change (LFC), which is a conservative estimation of the fold change with 90% confidence. For this data set, if a gene was induced by FSK with LFC>=1.3, we consider it as a good camp induced gene and therefore a potential CREB target.