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No probe set Gene Name Accession LocusLink Symbol Alias Symbols Description CTRL FSK (FSK vs CTRL) FC (FSK vs CTRL) LFC Note Link
1 213901_x_at RNA binding motif protein 9 AW14937923543RBM9 HRNBP2;RTA gb:AW149379 /DB_XREF=gi:6197275 /DB_XREF=xf36d11.x1 /CLONE=IMAGE:2620149 /FEA=EST /CNT=28 /TID=Hs.5011.2 /TIER=ConsEnd /STK=0 /UG=Hs.5011 /LL=23543 /UG_GENE=RBM9 /UG_TITLE=RNA binding motif protein 9 535.35 552.17 1.03 0.94 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
2 212104_s_at RNA binding motif protein 9 N9502623543RBM9 HRNBP2;RTA gb:N95026 /DB_XREF=gi:1267308 /DB_XREF=zb45d12.s1 /CLONE=IMAGE:306551 /FEA=DNA_3 /CNT=253 /TID=Hs.5011.1 /TIER=Stack /STK=11 /UG=Hs.5011 /LL=23543 /UG_GENE=RBM9 /UG_TITLE=RNA binding motif protein 9 499.84 503.59 1.01 0.92 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
3 216215_s_at RNA binding motif protein 9 AL04974823543RBM9 HRNBP2;RTA Consensus includes gb:AL049748 /DEF=Human DNA sequence from clone RP1-41P2 on chromosome 22 Contains the 3 part of the RBM9 gene for RNA binding motif protein 9 and the 3 part of the gene for a novel protein similar to part of APOL (apolipoprotein L) and TNF-inducible protein CG12... /FEA=mRNA_2 /DB_XREF=gi:6572235 /UG=Hs.5011 RNA binding motif protein 9 703.74 717.94 1.02 0.88 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
4 213898_at Consensus includes gb:AW149379 /FEA=EST /DB_XREF=gi:6197275 /DB_XREF=est:xf36d11.x1 /CLONE=IMAGE:2620149 /UG=Hs.5011 RNA binding motif protein 9 AW14937923543RBM9 HRNBP2;RTA Consensus includes gb:AW149379 /FEA=EST /DB_XREF=gi:6197275 /DB_XREF=est:xf36d11.x1 /CLONE=IMAGE:2620149 /UG=Hs.5011 RNA binding motif protein 9 559.07 547.06 -1.02 -0.89 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction

Sample Description:
Primary culture of human pancreatic islet was treated with cAMP agonist forskolin (FSK) and compared with control untreated samples. RNA was extracted using the Qiagen RNeasy kit. Two control and two forskolin treated samples were analyzed.

Microarray Analysis:
Total RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133A 2.0 Array. Array data was analyzed using the dChip software with PM-MM models.

Guidelines for Choosing camp Induced Genes in this Data Set:
The fold change (FC) value is positive for increased expression and negative for decrease expression. There is also a lower bound of fold change (LFC), which is a conservative estimation of the fold change with 90% confidence. For this data set, if a gene was induced by FSK with LFC>=1.3, we consider it as a good camp induced gene and therefore a potential CREB target.