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To quickly search the same gene in another data set, click the links from the last column. The locuslink number will be used as query.


No probe set Gene Name Accession LocusLink Symbol Alias Symbols Description CTRL FSK (FSK vs CTRL) FC (FSK vs CTRL) LFC Note Link
1 213965_s_at chromodomain helicase DNA binding protein 5 AL03540626038CHD5 DKFZp434N231;KIAA0444 "gb:AL035406 /DB_XREF=gi:8977826 /FEA=DNA_2 /CNT=58 /TID=Hs.158291.0 /TIER=Stack /STK=11 /UG=Hs.158291 /LL=26038 /UG_GENE=KIAA0444 /UG_TITLE=KIAA0444 protein /DEF=Human DNA sequence from clone RP1-233K16 on chromosome 1p36.21-36.33 Contains the gene KIAA0444, a putative chromodomain helicase DNA binding protein 3 (CHD3), the gene for potassium channel beta 2 subunit (KCNK2), two CpG island, ESTs, STSs and GSSs" 129.69 175.35 1.35 0.96 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
2 217250_s_at chromodomain helicase DNA binding protein 5 AL11028126038CHD5 DKFZp434N231;KIAA0444 Consensus includes gb:AL110281.1 /DEF=Homo sapiens mRNA; cDNA DKFZp434K213 (from clone DKFZp434K213). /FEA=mRNA /DB_XREF=gi:5817206 /UG=Hs.158291 KIAA0444 protein 42.85 33.37 -1.28 -0.65 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction

Sample Description:
Primary culture of human pancreatic islet was treated with cAMP agonist forskolin (FSK) and compared with control untreated samples. RNA was extracted using the Qiagen RNeasy kit. Two control and two forskolin treated samples were analyzed.

Microarray Analysis:
Total RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133A 2.0 Array. Array data was analyzed using the dChip software with PM-MM models.

Guidelines for Choosing camp Induced Genes in this Data Set:
The fold change (FC) value is positive for increased expression and negative for decrease expression. There is also a lower bound of fold change (LFC), which is a conservative estimation of the fold change with 90% confidence. For this data set, if a gene was induced by FSK with LFC>=1.3, we consider it as a good camp induced gene and therefore a potential CREB target.