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No probe set Gene Name Accession LocusLink Symbol Alias Symbols Description CTRL FSK (FSK vs CTRL) FC (FSK vs CTRL) LFC Note Link
1 205135_s_at nuclear fragile X mental retardation protein interacting protein 1 AL04984226747NUFIP1 NUFIP "gb:AL049842 /DB_XREF=gi:5419768 /FEA=FLmRNA /CNT=44 /TID=Hs.120247.0 /TIER=Stack /STK=11 /UG=Hs.120247 /LL=26747 /UG_GENE=NUFIP1 /UG_TITLE=nuclear fragile X mental retardation protein interacting protein 1 /DEF=Human DNA sequence from clone 129L7 on chromosome 6q12-13. Contains the gene for a PUTATIVE novel protein, ESTs, an STS, GSSs and a taga repeat polymorphism /FL=gb:NM_012345.1 gb:AF159548.1" 222.61 231.28 1.04 0.86 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
2 205136_s_at nuclear fragile X mental retardation protein interacting protein 1 NM_01234526747NUFIP1 NUFIP "gb:NM_012345.1 /DB_XREF=gi:6912541 /GEN=NUFIP1 /FEA=FLmRNA /CNT=44 /TID=Hs.120247.0 /TIER=FL /STK=3 /UG=Hs.120247 /LL=26747 /DEF=Homo sapiens nuclear fragile X mental retardation protein interacting protein 1 (NUFIP1), mRNA. /PROD=nuclear fragile X mental retardation proteininteracting protein 1 /FL=gb:NM_012345.1 gb:AF159548.1" 353.31 331.96 -1.06 -0.96 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
3 205134_s_at nuclear fragile X mental retardation protein interacting protein 1 AW59314326747NUFIP1 NUFIP gb:AW593143 /DB_XREF=gi:7280401 /DB_XREF=hg09f10.x1 /CLONE=IMAGE:2945131 /FEA=FLmRNA /CNT=44 /TID=Hs.120247.0 /TIER=Stack /STK=11 /UG=Hs.120247 /LL=26747 /UG_GENE=NUFIP1 /UG_TITLE=nuclear fragile X mental retardation protein interacting protein 1 /FL=gb:NM_012345.1 gb:AF159548.1 574.74 461.6 -1.25 -1.1 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction

Sample Description:
Primary culture of human pancreatic islet was treated with cAMP agonist forskolin (FSK) and compared with control untreated samples. RNA was extracted using the Qiagen RNeasy kit. Two control and two forskolin treated samples were analyzed.

Microarray Analysis:
Total RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133A 2.0 Array. Array data was analyzed using the dChip software with PM-MM models.

Guidelines for Choosing camp Induced Genes in this Data Set:
The fold change (FC) value is positive for increased expression and negative for decrease expression. There is also a lower bound of fold change (LFC), which is a conservative estimation of the fold change with 90% confidence. For this data set, if a gene was induced by FSK with LFC>=1.3, we consider it as a good camp induced gene and therefore a potential CREB target.