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No probe set Gene Name Accession LocusLink Symbol Alias Symbols Description CTRL FSK (FSK vs CTRL) FC (FSK vs CTRL) LFC Note Link
1 215665_at "3-beta-hydroxysteroid dehydrogenase, tissue-type heart" AL3595533283HSD3B1 HSD3B;HSDB3 "Consensus includes gb:AL359553 /DEF=Human DNA sequence from clone RP5-871G17 on chromosome 1. Contains ESTs, STSs and GSSs. Contains the HAO2 gene for hydroxyacid oxidase 2 (long chain), the HSD3B2 gene for hydroxy-delta-5-steroid dehydrogenase (3 beta-and steroid delta-isomerase 2)... /FEA=mRNA_1 /DB_XREF=gi:9944183 /UG=Hs.307108 Human DNA sequence from clone RP5-871G17 on chromosome 1. Contains ESTs, STSs and GSSs. Contains the HAO2 gene for hydroxyacid oxidase 2 (long chain), the HSD3B2 gene for hydroxy-delta-5-steroid dehydrogenase (3 beta-and steroid delta-isomerase 2), two GA" 115.97 137.75 1.19 0.85 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
2 204515_at "gb:NM_000862.1 /DB_XREF=gi:4504506 /GEN=HSD3B1 /FEA=FLmRNA /CNT=169 /TID=Hs.38586.0 /TIER=FL+Stack /STK=53 /UG=Hs.38586 /LL=3283 /DEF=Homo sapiens hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 (HSD3B1), mRNA. /PROD=hydroxy-delta-5-steroid dehydrogenase, 3 beta-and steroid delta-isomerase 1 /FL=gb:NM_000862.1 gb:M27137.1 gb:M35493.1" NM_0008623283HSD3B1 HSD3B;HSDB3 "gb:NM_000862.1 /DB_XREF=gi:4504506 /GEN=HSD3B1 /FEA=FLmRNA /CNT=169 /TID=Hs.38586.0 /TIER=FL+Stack /STK=53 /UG=Hs.38586 /LL=3283 /DEF=Homo sapiens hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 (HSD3B1), mRNA. /PROD=hydroxy-delta-5-steroid dehydrogenase, 3 beta-and steroid delta-isomerase 1 /FL=gb:NM_000862.1 gb:M27137.1 gb:M35493.1" 927.65 822.48 -1.13 -0.93 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction

Sample Description:
Primary culture of human pancreatic islet was treated with cAMP agonist forskolin (FSK) and compared with control untreated samples. RNA was extracted using the Qiagen RNeasy kit. Two control and two forskolin treated samples were analyzed.

Microarray Analysis:
Total RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133A 2.0 Array. Array data was analyzed using the dChip software with PM-MM models.

Guidelines for Choosing camp Induced Genes in this Data Set:
The fold change (FC) value is positive for increased expression and negative for decrease expression. There is also a lower bound of fold change (LFC), which is a conservative estimation of the fold change with 90% confidence. For this data set, if a gene was induced by FSK with LFC>=1.3, we consider it as a good camp induced gene and therefore a potential CREB target.