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To quickly search the same gene in another data set, click the links from the last column. The locuslink number will be used as query.


No probe set Gene Name Accession LocusLink Symbol Alias Symbols Description CTRL FSK (FSK vs CTRL) FC (FSK vs CTRL) LFC Note Link
1 36830_at mitochondrial intermediate peptidase U800344285MIPEP HMIP;MIP " Cluster Incl. U80034:Human mitochondrial intermediate peptidase precursor (MIPEP) mRNA, mitochondrial gene encoding mitochondrial protein, complete cds /cds=(74,2215) /gb=U80034 /gi=1763641 /ug=Hs.68583 /len=2374 " 184.43 162.2 -1.14 -0.88 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
2 204305_at mitochondrial intermediate peptidase NM_0059324285MIPEP HMIP;MIP "gb:NM_005932.1 /DEF=Homo sapiens mitochondrial intermediate peptidase (MIPEP), nuclear gene encoding mitochondrial protein, mRNA. /FEA=mRNA /GEN=MIPEP /PROD=mitochondrial intermediate peptidase /DB_XREF=gi:5174566 /UG=Hs.68583 mitochondrial intermediate peptidase /FL=gb:U80034.1 gb:NM_005932.1" 313.64 269.58 -1.16 -0.99 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction

Sample Description:
Primary culture of human pancreatic islet was treated with cAMP agonist forskolin (FSK) and compared with control untreated samples. RNA was extracted using the Qiagen RNeasy kit. Two control and two forskolin treated samples were analyzed.

Microarray Analysis:
Total RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133A 2.0 Array. Array data was analyzed using the dChip software with PM-MM models.

Guidelines for Choosing camp Induced Genes in this Data Set:
The fold change (FC) value is positive for increased expression and negative for decrease expression. There is also a lower bound of fold change (LFC), which is a conservative estimation of the fold change with 90% confidence. For this data set, if a gene was induced by FSK with LFC>=1.3, we consider it as a good camp induced gene and therefore a potential CREB target.