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No probe set Gene Name Accession LocusLink Symbol Alias Symbols Description CTRL FSK (FSK vs CTRL) FC (FSK vs CTRL) LFC Note Link
1 221643_s_at arginine-glutamic acid dipeptide (RE) repeats AF016005473RERE ARG;ARP;ATN1L;DNB1;KIAA0458 "gb:AF016005.1 /DEF=Homo sapiens chromosome 1 atrophin-1 related protein (DRPLA) mRNA, complete cds. /FEA=mRNA /GEN=DRPLA /PROD=atrophin-1 related protein /DB_XREF=gi:3411014 /UG=Hs.194369 arginine-glutamic acid dipeptide (RE) repeats /FL=gb:AF016005.1" 161.18 180.92 1.12 0.9 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
2 200939_s_at arginine-glutamic acid dipeptide (RE) repeats AI920976473RERE ARG;ARP;ATN1L;DNB1;KIAA0458 "gb:NM_012102.1 /DEF=Homo sapiens arginine-glutamic acid dipeptide (RE) repeats (RERE), mRNA. /FEA=mRNA /GEN=RERE /PROD=arginine-glutamic acid dipeptide (RE) repeats /DB_XREF=gi:6912253 /UG=Hs.194369 arginine-glutamic acid dipeptide (RE) repeats /FL=gb:AF118275.1 gb:NM_012102.1 gb:AB036737.1" 181.68 183.75 1.01 0.87 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
3 200938_s_at arginine-glutamic acid dipeptide (RE) repeats AI920976473RERE ARG;ARP;ATN1L;DNB1;KIAA0458 gb:AI920976 /DB_XREF=gi:5656940 /DB_XREF=wo16h05.x1 /CLONE=IMAGE:2455545 /FEA=FLmRNA /CNT=318 /TID=Hs.194369.0 /TIER=Stack /STK=14 /UG=Hs.194369 /LL=473 /UG_GENE=RERE /UG_TITLE=arginine-glutamic acid dipeptide (RE) repeats /FL=gb:NM_012102.1 gb:AF118275.1 gb:AB036737.1 88.06 81.04 -1.09 -0.84 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
4 200940_s_at arginine-glutamic acid dipeptide (RE) repeats AI920976473RERE ARG;ARP;ATN1L;DNB1;KIAA0458 "gb:AB036737.1 /DEF=Homo sapiens mRNA for RERE, complete cds. /FEA=mRNA /PROD=RERE /DB_XREF=gi:8096339 /UG=Hs.194369 arginine-glutamic acid dipeptide (RE) repeats /FL=gb:AF118275.1 gb:NM_012102.1 gb:AB036737.1" 503.48 484.15 -1.04 -0.91 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction

Sample Description:
Primary culture of human pancreatic islet was treated with cAMP agonist forskolin (FSK) and compared with control untreated samples. RNA was extracted using the Qiagen RNeasy kit. Two control and two forskolin treated samples were analyzed.

Microarray Analysis:
Total RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133A 2.0 Array. Array data was analyzed using the dChip software with PM-MM models.

Guidelines for Choosing camp Induced Genes in this Data Set:
The fold change (FC) value is positive for increased expression and negative for decrease expression. There is also a lower bound of fold change (LFC), which is a conservative estimation of the fold change with 90% confidence. For this data set, if a gene was induced by FSK with LFC>=1.3, we consider it as a good camp induced gene and therefore a potential CREB target.