Search results are listed below.
Tip: To
quickly search the same gene in another data set, click the links from the last
column. The locuslink number will be used as query.
| No | probe set | Gene Name | Accession | LocusLink | Symbol | Alias Symbols | Description | CTRL | FSK | (FSK vs CTRL) FC | (FSK vs CTRL) LFC | Note | Link |
| 1 | 214563_at | "protocadherin gamma subfamily C, 3" | AF152524 | 5098 | PCDHGC3 | PC43;PCDH-GAMMA-C3;PCDH2 | "gb:AF152524.1 /DB_XREF=gi:5457095 /GEN=PCDH-gamma-C3 /FEA=FLmRNA /CNT=2 /TID=Hs.173310.1 /TIER=FL /STK=0 /UG=Hs.173310 /LL=5098 /DEF=Homo sapiens protocadherin gamma C3 short form protein (PCDH-gamma-C3) variable region sequence, complete cds. /PROD=protocadherin gamma C3 short form protein /FL=gb:AF152524.1" | 374.66 | 395.53 | 1.06 | 0.93 | "all, " | HEK293T_Expression Human_ChIP_chip Human_CRE_prediction |
| 2 | 214564_s_at | "protocadherin gamma subfamily C, 3" | AF152524 | 5098 | PCDHGC3 | PC43;PCDH-GAMMA-C3;PCDH2 | "Consensus includes gb:AF152524.1 /DEF=Homo sapiens protocadherin gamma C3 short form protein (PCDH-gamma-C3) variable region sequence, complete cds. /FEA=CDS /GEN=PCDH-gamma-C3 /PROD=protocadherin gamma C3 short form protein /DB_XREF=gi:5457095 /UG=Hs.173310 protocadherin gamma subfamily C, 3 /FL=gb:AF152524.1" | 115.4 | 109.68 | -1.05 | -0.88 | "all, " | HEK293T_Expression Human_ChIP_chip Human_CRE_prediction |
| 3 | 205717_x_at | "protocadherin gamma subfamily A, 1 /// protocadherin gamma subfamily A, 10 /// protocadherin gamma subfamily A, 11 /// protocadherin gamma subfamily A, 12 /// protocadherin gamma subfamily A, 2 /// protocadherin gamma subfamily A, 3 /// protocadherin gamma subfamily A, 4 /// protocadherin gamma subfamily A, 5 /// protocadherin gamma subfamily A, 6 /// protocadherin gamma subfamily A, 7 /// protocadherin gamma subfamily A, 8 /// protocadherin gamma subfamily A, 9 /// protocadherin gamma subfamily B, 1 /// protocadherin gamma subfamily B, 2 /// protocadherin gamma subfamily B, 3 /// protocadherin gamma subfamily B, 4 /// protocadherin gamma subfamily B, 5 /// protocadherin gamma subfamily B, 6 /// protocadherin gamma subfamily B, 7 /// protocadherin gamma subfamily C, 3 /// protocadherin gamma subfamily C, 4 /// protocadherin gamma subfamily C, 5" | NM_002588 | 5098 | PCDHGC3 | PC43;PCDH-GAMMA-C3;PCDH2 | "gb:NM_002588.1 /DEF=Homo sapiens protocadherin gamma subfamily C, 3 (PCDHGC3), mRNA. /FEA=mRNA /GEN=PCDHGC3 /PROD=protocadherin gamma subfamily C, 3 /DB_XREF=gi:4505632 /UG=Hs.173310 protocadherin gamma subfamily C, 3 /FL=gb:L11373.1 gb:NM_002588.1 gb:AF152337.1" | 919.83 | 889.41 | -1.03 | -0.93 | "all, " | HEK293T_Expression Human_ChIP_chip Human_CRE_prediction |
| 4 | 211066_x_at | "protocadherin gamma subfamily A, 1 /// protocadherin gamma subfamily A, 10 /// protocadherin gamma subfamily A, 11 /// protocadherin gamma subfamily A, 12 /// protocadherin gamma subfamily A, 2 /// protocadherin gamma subfamily A, 3 /// protocadherin gamma subfamily A, 4 /// protocadherin gamma subfamily A, 5 /// protocadherin gamma subfamily A, 6 /// protocadherin gamma subfamily A, 7 /// protocadherin gamma subfamily A, 8 /// protocadherin gamma subfamily A, 9 /// protocadherin gamma subfamily B, 1 /// protocadherin gamma subfamily B, 2 /// protocadherin gamma subfamily B, 3 /// protocadherin gamma subfamily B, 4 /// protocadherin gamma subfamily B, 5 /// protocadherin gamma subfamily B, 6 /// protocadherin gamma subfamily B, 7 /// protocadherin gamma subfamily C, 3 /// protocadherin gamma subfamily C, 4 /// protocadherin gamma subfamily C, 5 /// protocadherin gamma subfamily A, 1 /// protocadherin gamma subfamily A, 10 /// protocadherin gamma subfamily A, 11 /// protocadherin gamma subfamily A, 12 /// protocadherin gamma subfamily A, 2 /// protocadherin gamma subfamily A, 3 /// protocadherin gamma subfamily A, 4 /// protocadherin gamma subfamily A, 5 /// protocadherin gamma subfamily A, 6 /// protocadherin gamma subfamily A, 7 /// protocadherin gamma subfamily A, 8 /// protocadherin gamma subfamily A, 9 /// protocadherin gamma subfamily B, 1 /// protocadherin gamma subfamily B, 2 /// protocadherin gamma subfamily B, 3 /// protocadherin gamma subfamily B, 4 /// protocadherin gamma subfamily B, 5 /// protocadherin gamma subfamily B, 6 /// protocadherin gamma subfamily B, 7 /// protocadherin gamma subfamily C, 3 /// protocadherin gamma subfamily C, 4 /// protocadherin gamma subfamily C, 5" | BC006439 | 5098 | PCDHGC3 | PC43;PCDH-GAMMA-C3;PCDH2 | "gb:BC006439.1 /DEF=Homo sapiens, Similar to protocadherin gamma subfamily A, 5, clone MGC:13163, mRNA, complete cds. /FEA=mRNA /PROD=Similar to protocadherin gamma subfamily A, 5 /DB_XREF=gi:13623638 /FL=gb:BC006439.1" | 1449.4 | 1334.18 | -1.09 | -1 | "all, " | HEK293T_Expression Human_ChIP_chip Human_CRE_prediction |
Sample Description:
Primary culture of human pancreatic islet was treated with cAMP agonist forskolin
(FSK) and compared with control untreated samples. RNA was extracted using the
Qiagen RNeasy kit. Two control and two forskolin treated samples were analyzed.
Microarray Analysis:
Total RNA samples were labeled and hybridized by standard protocol to Affymetrix
GeneChip Human Genome U133A 2.0 Array. Array data was analyzed using the dChip
software with PM-MM models.
Guidelines for Choosing camp Induced Genes in this Data
Set:
The fold change (FC) value is positive for increased expression and negative
for decrease expression. There is also a lower bound of fold change (LFC), which
is a conservative estimation of the fold change with 90% confidence. For this
data set, if a gene was induced by FSK with LFC>=1.3, we consider it as a
good camp induced gene and therefore a potential CREB target.