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Tip: To quickly search the same gene in another data set, click the links from the last column. The locuslink number will be used as query.
|No||probe set||Gene Name||Accession||LocusLink||Symbol||Alias Symbols||Description||CTRL||FSK||(FSK vs CTRL) FC||(FSK vs CTRL) LFC||Note||Link|
|1||209698_at||chromosome 6 open reading frame 18||AF216493||54535||C6orf18||HCR||"gb:AF216493.1 /DB_XREF=gi:8272481 /GEN=HCR /FEA=FLmRNA /CNT=65 /TID=Hs.110746.0 /TIER=FL+Stack /STK=20 /UG=Hs.110746 /LL=54535 /DEF=Homo sapiens a-helical protein (HCR) mRNA, complete cds. /PROD=a-helical protein /FL=gb:AB029331.1 gb:AF216493.1 gb:NM_019052.1"||751.52||816.63||1.09||0.9||"all, "||HEK293T_Expression Human_ChIP_chip Human_CRE_prediction|
|2||37424_at||chromosome 6 open reading frame 18||AB029343||54535||C6orf18||HCR||" Cluster Incl. AB029343:Homo sapiens HCR (a-helix coiled-coil rod homologue) gene, complete cds /cds=(22,2292) /gb=AB029343 /gi=5360900 /ug=Hs.110746 /len=2445 "||161.1||184.82||1.15||0.77||"all, "||HEK293T_Expression Human_ChIP_chip Human_CRE_prediction|
|3||42361_g_at||chromosome 6 open reading frame 18||AI588986||54535||C6orf18||HCR||"Cluster Incl. AI588986:tk15g03.x1 Homo sapiens cDNA, 3 end /clone=IMAGE-2151124 /clone_end=3' /gb=AI588986 /gi=4598034 /ug=Hs.236209 /len=499"||83.92||71.81||-1.17||-0.98||"all, "||HEK293T_Expression Human_ChIP_chip Human_CRE_prediction|
|4||37425_g_at||chromosome 6 open reading frame 18||AB029343||54535||C6orf18||HCR||" Cluster Incl. AB029343:Homo sapiens HCR (a-helix coiled-coil rod homologue) gene, complete cds /cds=(22,2292) /gb=AB029343 /gi=5360900 /ug=Hs.110746 /len=2445 "||766.14||650.72||-1.18||-1.12||"all, "||HEK293T_Expression Human_ChIP_chip Human_CRE_prediction|
Primary culture of human pancreatic islet was treated with cAMP agonist forskolin (FSK) and compared with control untreated samples. RNA was extracted using the Qiagen RNeasy kit. Two control and two forskolin treated samples were analyzed.
Total RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133A 2.0 Array. Array data was analyzed using the dChip software with PM-MM models.
Guidelines for Choosing camp Induced Genes in this Data
The fold change (FC) value is positive for increased expression and negative for decrease expression. There is also a lower bound of fold change (LFC), which is a conservative estimation of the fold change with 90% confidence. For this data set, if a gene was induced by FSK with LFC>=1.3, we consider it as a good camp induced gene and therefore a potential CREB target.