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No probe set Gene Name Accession LocusLink Symbol Alias Symbols Description CTRL FSK (FSK vs CTRL) FC (FSK vs CTRL) LFC Note Link
1 212191_x_at ribosomal protein L13 AW5746646137RPL13 BBC1;D16S444E Consensus includes gb:AW574664 /FEA=EST /DB_XREF=gi:7246203 /DB_XREF=est:UI-HF-BL0-abw-d-10-0-UI.s1 /CLONE=IMAGE:3057859 /UG=Hs.180842 ribosomal protein L13 5103.66 5406.34 1.06 1.01 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
2 208929_x_at ribosomal protein L13 BC0049546137RPL13 BBC1;D16S444E "gb:BC004954.1 /DEF=Homo sapiens, clone MGC:10897, mRNA, complete cds. /FEA=mRNA /PROD=Unknown (protein for MGC:10897) /DB_XREF=gi:13436331 /UG=Hs.180842 ribosomal protein L13 /FL=gb:BC000851.1 gb:BC004954.1 gb:NM_000977.1" 5379.3 5680.03 1.06 1 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
3 214351_x_at ribosomal protein L13 AA7892786137RPL13 BBC1;D16S444E Consensus includes gb:AA789278 /FEA=EST /DB_XREF=gi:2849398 /DB_XREF=est:aj28b10.s1 /CLONE=1391611 /UG=Hs.180842 ribosomal protein L13 5038.76 5305.46 1.05 1 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
4 212933_x_at ribosomal protein L13 AA9617486137RPL13 BBC1;D16S444E gb:AA961748 /DB_XREF=gi:3133912 /DB_XREF=or60d03.s1 /CLONE=IMAGE:1600229 /FEA=EST /CNT=71 /TID=Hs.180842.1 /TIER=Stack /STK=32 /UG=Hs.180842 /LL=6137 /UG_GENE=RPL13 /UG_TITLE=ribosomal protein L13 5281.1 5397.53 1.02 0.99 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
5 212734_x_at ribosomal protein L13 AI1867356137RPL13 BBC1;D16S444E gb:AI186735 /DB_XREF=gi:3737373 /DB_XREF=qe79b09.x1 /CLONE=IMAGE:1745177 /FEA=EST /CNT=103 /TID=Hs.180842.4 /TIER=Stack /STK=28 /UG=Hs.180842 /LL=6137 /UG_GENE=RPL13 /UG_TITLE=ribosomal protein L13 6303.64 6449.79 1.02 0.97 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
6 214976_at ribosomal protein L13 AI5544676137RPL13 BBC1;D16S444E "Consensus includes gb:AI554467 /FEA=EST /DB_XREF=gi:4486830 /DB_XREF=est:tq11h03.x1 /CLONE=IMAGE:2208533 /UG=Hs.306856 Homo sapiens cDNA: FLJ22848 fis, clone KAIA897" 107.04 88.77 -1.21 -1.02 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction

Sample Description:
Primary culture of human pancreatic islet was treated with cAMP agonist forskolin (FSK) and compared with control untreated samples. RNA was extracted using the Qiagen RNeasy kit. Two control and two forskolin treated samples were analyzed.

Microarray Analysis:
Total RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133A 2.0 Array. Array data was analyzed using the dChip software with PM-MM models.

Guidelines for Choosing camp Induced Genes in this Data Set:
The fold change (FC) value is positive for increased expression and negative for decrease expression. There is also a lower bound of fold change (LFC), which is a conservative estimation of the fold change with 90% confidence. For this data set, if a gene was induced by FSK with LFC>=1.3, we consider it as a good camp induced gene and therefore a potential CREB target.