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No probe set Gene Name Accession LocusLink Symbol Alias Symbols Description CTRL FSK (FSK vs CTRL) FC (FSK vs CTRL) LFC Note Link
1 211573_x_at "transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)" M984787052TGM2 TGC "gb:M98478.1 /DB_XREF=gi:339577 /FEA=FLmRNA /CNT=1 /TID=Hs.8265.2 /TIER=FL /STK=0 /UG=Hs.8265 /LL=7052 /UG_GENE=TGM2 /DEF=Human transglutaminase mRNA, complete cds. /PROD=transglutaminase /FL=gb:M98478.1" 581.44 621.62 1.07 0.97 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
2 201042_at "transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)" AL0316517052TGM2 TGC "gb:AL031651 /DB_XREF=gi:6065866 /FEA=FLmRNA /CNT=453 /TID=Hs.8265.0 /TIER=Stack /STK=206 /UG=Hs.8265 /LL=7052 /UG_GENE=TGM2 /UG_TITLE=transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase) /DEF=Human DNA sequence from clone RP5-1054A22 on chromosome 20q11.22-12 Contains two isoforms of the gene for TGM2 (transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase), ESTs, STSs, GSSs and a CpG island /FL=gb:M55153.1 gb:NM_004613.1" 2449.23 2283.2 -1.07 -0.97 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction
3 211003_x_at "transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)" BC0035517052TGM2 TGC "gb:BC003551.1 /DB_XREF=gi:13097680 /FEA=FLmRNA /CNT=2 /TID=Hs.8265.1 /TIER=FL /STK=0 /UG=Hs.8265 /LL=7052 /UG_GENE=TGM2 /DEF=Homo sapiens, Similar to transglutaminase 2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase), clone MGC:1193, mRNA, complete cds. /PROD=Similar to transglutaminase 2 (C polypeptide,protein-glutamine-gamma-glutamyltransferase) /FL=gb:BC003551.1" 331.73 235.45 -1.41 -1.1 "all, " HEK293T_Expression Human_ChIP_chip Human_CRE_prediction

Sample Description:
Primary culture of human pancreatic islet was treated with cAMP agonist forskolin (FSK) and compared with control untreated samples. RNA was extracted using the Qiagen RNeasy kit. Two control and two forskolin treated samples were analyzed.

Microarray Analysis:
Total RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Human Genome U133A 2.0 Array. Array data was analyzed using the dChip software with PM-MM models.

Guidelines for Choosing camp Induced Genes in this Data Set:
The fold change (FC) value is positive for increased expression and negative for decrease expression. There is also a lower bound of fold change (LFC), which is a conservative estimation of the fold change with 90% confidence. For this data set, if a gene was induced by FSK with LFC>=1.3, we consider it as a good camp induced gene and therefore a potential CREB target.