Search results are listed below.
Tip: To
quickly search the same gene in another data set, click the links from the last
column. The locuslink number will be used as query.
| No | probe set | Gene Name | Accession | LocusLink | Symbol | Alias Symbols | Description | CTRL | FSK | (FSK vs CTRL) FC | (FSK vs CTRL) LFC | Note | Link |
| 1 | 201343_at | "ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast)" | BE621259 | 7322 | UBE2D2 | E2(17)KB2;PUBC1;UBC4;UBC4/5;UBCH5B | gb:BE621259 /DB_XREF=gi:9892197 /DB_XREF=601493415F1 /CLONE=IMAGE:3895850 /FEA=FLmRNA /CNT=275 /TID=Hs.108332.0 /TIER=Stack /STK=86 /UG=Hs.108332 /LL=7322 /UG_GENE=UBE2D2 /UG_TITLE=ubiquitin-conjugating enzyme E2D 2 (homologous to yeast UBC45) /FL=gb:NM_003339.1 gb:U39317.1 | 1231.85 | 1269.62 | 1.03 | 0.98 | "all, " | HEK293T_Expression Human_ChIP_chip Human_CRE_prediction |
| 2 | 201345_s_at | "ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast)" | NM_003339 | 7322 | UBE2D2 | E2(17)KB2;PUBC1;UBC4;UBC4/5;UBCH5B | "gb:NM_003339.1 /DB_XREF=gi:4507774 /GEN=UBE2D2 /FEA=FLmRNA /CNT=275 /TID=Hs.108332.0 /TIER=FL+Stack /STK=16 /UG=Hs.108332 /LL=7322 /DEF=Homo sapiens ubiquitin-conjugating enzyme E2D 2 (homologous to yeast UBC45) (UBE2D2), mRNA. /PROD=ubiquitin-conjugating enzyme E2D 2 (homologousto yeast UBC45) /FL=gb:NM_003339.1 gb:U39317.1" | 1038.8 | 1043.54 | 1 | 0.95 | "all, " | HEK293T_Expression Human_ChIP_chip Human_CRE_prediction |
| 3 | 201344_at | "ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast)" | BF196642 | 7322 | UBE2D2 | E2(17)KB2;PUBC1;UBC4;UBC4/5;UBCH5B | Consensus includes gb:BF196642 /FEA=EST /DB_XREF=gi:11084786 /DB_XREF=est:7m93c12.x1 /CLONE=IMAGE:3562750 /UG=Hs.108332 ubiquitin-conjugating enzyme E2D 2 (homologous to yeast UBC45) /FL=gb:U39317.1 gb:NM_003339.1 | 328.56 | 333.97 | 1.02 | 0.92 | "all, " | HEK293T_Expression Human_ChIP_chip Human_CRE_prediction |
Sample Description:
Primary culture of human pancreatic islet was treated with cAMP agonist forskolin
(FSK) and compared with control untreated samples. RNA was extracted using the
Qiagen RNeasy kit. Two control and two forskolin treated samples were analyzed.
Microarray Analysis:
Total RNA samples were labeled and hybridized by standard protocol to Affymetrix
GeneChip Human Genome U133A 2.0 Array. Array data was analyzed using the dChip
software with PM-MM models.
Guidelines for Choosing camp Induced Genes in this Data
Set:
The fold change (FC) value is positive for increased expression and negative
for decrease expression. There is also a lower bound of fold change (LFC), which
is a conservative estimation of the fold change with 90% confidence. For this
data set, if a gene was induced by FSK with LFC>=1.3, we consider it as a
good camp induced gene and therefore a potential CREB target.