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No probe set Symbol Alias Symbols Gene Name Accession LocusLink Description Fasting Refed Hepatocyte 0hr Hepatocyte 1hr FSK Hepatocyte 4hr FSK (Fasting vs Refed) FC (Fasting vs Refed) LFC (Hepatocyte 1hr FSK/0hr) FC (Hepatocyte 1hr FSK/0hr) LFC (Hepatocyte 4hr FSK/0hr) FC (Hepatocyte 4hr FSK/0hr) LFC Link
1 1455696_a_at Prpf4b 2610037H07;MGC5960;Prp4;Prp4k;Prpk;cbp143 PRP4 pre-mRNA processing factor 4 homolog B (yeast) BB34482719134gb:BB344827 /DB_XREF=gi:16404899 /DB_XREF=BB344827 /CLONE=B930053H17 /FEA=EST /CNT=15 /TID=Mm.10027.3 /TIER=Stack /STK=9 /UG=Mm.10027 /LL=19134 /UG_GENE=Prpk /UG_TITLE=pre-mRNA protein kinase 540.6 495.4 292.5 235.1 336.5 1.09 1.01 -1.24 -1.03 1.15 1.01 "all, " MIN6_Expression Mouse_CRE_Prediction
2 1436427_at Prpf4b 2610037H07;MGC5960;Prp4;Prp4k;Prpk;cbp143 PRP4 pre-mRNA processing factor 4 homolog B (yeast) BB34482719134gb:BB344827 /DB_XREF=gi:16404899 /DB_XREF=BB344827 /CLONE=B930053H17 /FEA=EST /CNT=15 /TID=Mm.10027.3 /TIER=Stack /STK=9 /UG=Mm.10027 /LL=19134 /UG_GENE=Prpk /UG_TITLE=pre-mRNA protein kinase 769.2 706.5 190.2 134.0 154.3 1.09 1.01 -1.42 -0.31 -1.23 -0.29 "all, " MIN6_Expression Mouse_CRE_Prediction
3 1425498_at Prpf4b 2610037H07;MGC5960;Prp4;Prp4k;Prpk;cbp143 PRP4 pre-mRNA processing factor 4 homolog B (yeast) AV11484519134gb:AV114845 /DB_XREF=gi:16382244 /DB_XREF=AV114845 /CLONE=2610037H07 /FEA=FLmRNA /CNT=108 /TID=Mm.10027.1 /TIER=Stack /STK=30 /UG=Mm.10027 /LL=19134 /UG_GENE=Prpk /UG_TITLE=pre-mRNA protein kinase /FL=gb:U48737.1 361.7 311.9 650.2 555.5 624.8 1.16 0.97 -1.17 -1.09 -1.04 -0.97 "all, " MIN6_Expression Mouse_CRE_Prediction
4 1451732_at Prpf4b 2610037H07;MGC5960;Prp4;Prp4k;Prpk;cbp143 PRP4 pre-mRNA processing factor 4 homolog B (yeast) BI45387219134gb:BI453872 /DB_XREF=gi:15244528 /DB_XREF=603174745F1 /CLONE=IMAGE:5253994 /FEA=FLmRNA /CNT=108 /TID=Mm.10027.1 /TIER=ConsEnd /STK=0 /UG=Mm.10027 /LL=19134 /UG_GENE=Prpk /UG_TITLE=pre-mRNA protein kinase /FL=gb:U48737.1 619.2 614.8 779.8 731.6 413.3 1.01 0.92 -1.07 -0.98 -1.89 -1.52 "all, " MIN6_Expression Mouse_CRE_Prediction
5 1451909_a_at Prpf4b 2610037H07;MGC5960;Prp4;Prp4k;Prpk;cbp143 PRP4 pre-mRNA processing factor 4 homolog B (yeast) BC00376919134"gb:BC003769.1 /DB_XREF=gi:13277749 /FEA=FLmRNA /CNT=1 /TID=Mm.10027.2 /TIER=FL /STK=1 /UG=Mm.10027 /LL=19134 /UG_GENE=Prpk /DEF=Mus musculus, Similar to serinethreonine-protein kinase PRP4 homolog, clone MGC:5960 IMAGE:3488391, mRNA, complete cds. /PROD=Similar to serinethreonine-protein kinase PRP4homolog /FL=gb:BC003769.1" 253.4 251.0 337.0 324.0 323.0 1.01 0.85 -1.04 -0.88 -1.04 -0.89 "all, " MIN6_Expression Mouse_CRE_Prediction
6 1425497_a_at Prpf4b 2610037H07;MGC5960;Prp4;Prp4k;Prpk;cbp143 PRP4 pre-mRNA processing factor 4 homolog B (yeast) U4873719134"gb:U48737.1 /DB_XREF=gi:1399463 /GEN=PRP4m /FEA=FLmRNA /CNT=108 /TID=Mm.10027.1 /TIER=FL /STK=1 /UG=Mm.10027 /LL=19134 /DEF=Mus musculus serinethreonine-protein kinase PRP4m (PRP4m) mRNA, complete cds. /PROD=serinethreonine-protein kinase PRP4m /FL=gb:U48737.1" 325.0 332.1 477.1 427.2 541.8 -1.02 -0.69 -1.12 -1.01 1.14 0.97 "all, " MIN6_Expression Mouse_CRE_Prediction

Sample Description:
Fasting/Refed: eight-week old male C57BL6/J mouse was fasted for 20 hr to induce glucagon-mediated cAMP signaling in hepatocytes (fasting sample). Control group (refed sample) was fasted for 16 hr then given food for 4 hr. Liver RNA was extracted using Trizol reagent and purified using the Qiagen RNeasy kit.
In parallel, mouse primary hepatocyte culture was treated with cAMP agonist forskolin (FSK) for 1hr or 4hr and total RNA was extracted using the Qiagen RNeasy kit.

Microarray Analysis:
Total RNA samples were labeled and hybridized by standard protocol to Affymetrix GeneChip Mouse Genome 430 2.0 Array. Array data was analyzed using the dChip software with PM-MM models.

Guidelines for Choosing cAMP Induced Genes in this Data Set:
The fold change (FC) value is positive for increased expression and negative for decrease expression. There is also a lower bound of fold change (LFC), which is a conservative estimation of the fold change with 90% confidence. For this data set, if a gene was induced by fasting (LFC>=1) in liver and was also induced by FSK in hepatocyte in at least one of the two time points (LFC>=1 at 1hr or 4hr), then we consider it as a good cAMP induced gene in liver and therefore a potential CREB target.